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Ligand · TRA

TRA · Aconitate ion

TRA, Aconitate ion (C6 H3 O6 -3, 171.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
TRA
Formula
C6 H3 O6 -3
Class
ligand
Structures
4
PDB entries
2

Binding sites

TRA in 4 structures; the first of them:

  • 1ACO · Crystal structure of aconitase with transaconitate bound · TRA A755 · binds GLN72, ALA74, THR75, HIS101, ASP165, SER166, HIS167, ILE425 and 6 more
  • 1L5J · Crystal structure of E. COLI aconitase B. · TRA A866 · binds ARG191, SER244, SER245, ARG246, GLN414, THR416, THR417, HIS444 and 6 more
  • 1ACO · Crystal structure of aconitase with transaconitate bound · TRA A755 · binds GLN72, ALA74, THR75, HIS101, ASP165, SER166, HIS167, ILE425 and 6 more
  • 1L5J · Crystal structure of E. COLI aconitase B. · TRA A866 · binds ARG191, SER244, SER245, ARG246, GLN414, THR416, THR417, HIS444 and 6 more

Residues it binds most

ARG 6, SER 6, HIS 6, THR 6, ASP 6, GLN 6, MET 4, ALA 2, ILE 2 (residue and the binding sites it lines).

Found with

  • F3S · FE3-S4 cluster
  • SF4 · Iron/sulfur cluster

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