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Ligand · TMR

TMR · 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose

TMR, 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose (C7 H14 O3 S, 178.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
TMR
Formula
C7 H14 O3 S
Class
sugar
Structures
2
PDB entries
1

Binding sites

TMR in 2 structures; the first of them:

  • 1PIK · Esperamicin A1-DNA complex, NMR, 4 structures · TMR B22 · binds DC6, DC7, DG8, DG12, DG13, DA14, DT15
  • 1PIK · Esperamicin A1-DNA complex, NMR, 4 structures · TMR B22 · binds DC6, DC7, DG8, DG12, DG13, DA14, DT15

Residues it binds most

DG 2, DC 2, DA 2, DT 2 (residue and the binding sites it lines).

Found with

  • DAG · 4-amino-4,6-dideoxy-beta-D-glucopyranose
  • DPA · 4,5-dimethoxy-N-(2'-methoxypropenoyl anthranilate)
  • MTC · [1,8-dihydroxy-11-oxo-13-(2-methyltrithio-ethylidene)-bicyclo[7.3.1]trideca-4,9-diene-2,6-diyn-10-yl]-carbamic acid methyl ester
  • DLF · 2-deoxy-alpha-L-fucopyranose
  • MAT · 2,4-dideoxy-3-O-methyl-4-(propan-2-ylamino)-alpha-L-threo-pentopyranose

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