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Ligand · TFF

TFF · 5'-O-[(R)-{[(R)-[difluoro(phosphono)methyl](hydroxy)phosphoryl](difluoro)methyl}(hydroxy)phosphoryl]thymidine

TFF, 5'-O-[(R)-{[(R)-[difluoro(phosphono)methyl](hydroxy)phosphoryl](difluoro)methyl}(hydroxy)phosphoryl]thymidine (C12 H17 F4 N2 O12 P3, 550.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding…

Component
TFF
Formula
C12 H17 F4 N2 O12 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

TFF in 2 structures; the first of them:

  • 3LK9 · DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P · TFF A338 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more
  • 3LK9 · DNA polymerase beta with a gapped DNA substrate and DTMP(CF2)P(CF2)P · TFF A338 · binds ARG149, GLY179, SER180, ARG183, SER188, GLY189, ASP190, ASP192 and 11 more

Residues it binds most

ASP 2, GLY 2, SER 2, ARG 2, ASN 2, DA 2, DC 2, DG 2, PHE 2, THR 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • NA · Sodium ion
  • CL · Chloride ion

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