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Ligand · TDN

TDN · 2-[(2E)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-(1-oxidanylpropylidene)-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate

TDN, 2-[(2E)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-(1-oxidanylpropylidene)-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate (C15 H24 N4 O8 P2 S, 482.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records…

Component
TDN
Formula
C15 H24 N4 O8 P2 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

TDN in 2 structures; the first of them:

  • 5B48 · 2-Oxoacid:Ferredoxin Oxidoreductase 1 from Sulfolobus tokodai · TDN B402 · binds SER41, TYR253, PRO254, ILE255, THR256, GLU294, PRO318, GLY319 and 23 more
  • 5B48 · 2-OXOACID:FERREDOXIN oxidoreductase 1 from sulfolobus tokodai · TDN B402 · binds SER41, TYR253, PRO254, ILE255, THR256, GLU294, PRO318, GLY319 and 23 more

Residues it binds most

GLY 2, ASP 2, ILE 2, PRO 2, THR 2, GLU 2, LEU 2, SER 2, TYR 2, ARG 2 (residue and the binding sites it lines).

Found with

  • SF4 · Iron/sulfur cluster
  • MG · Magnesium ion

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