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Ligand · TDE

TDE · (E)-(2R,3R,4S,5R)-3,4,5-trihydroxy-2-methoxy-8,8-dimethyl-non-6-enoic acid ((3S,6R)-6-hydroxy-2-oxo-azepan-3-yl)-amide

TDE, (E)-(2R,3R,4S,5R)-3,4,5-trihydroxy-2-methoxy-8,8-dimethyl-non-6-enoic acid ((3S,6R)-6-hydroxy-2-oxo-azepan-3-yl)-amide (C18 H32 N2 O7, 388.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every…

Component
TDE
Formula
C18 H32 N2 O7
Class
ligand
Structures
2
PDB entries
1

Binding sites

TDE in 2 structures; the first of them:

  • 1QZY · Human Methionine Aminopeptidase in complex with bengamide inhibitor LAF153 and cobalt · TDE A500 · binds PHE219, PRO220, ALA230, HIS231, ASP251, ASP262, ASN327, LEU328 and 14 more
  • 1QZY · Human methionine aminopeptidase in complex with bengamide inhibitor LAF153 and cobalt · TDE A500 · binds PHE219, PRO220, ALA230, HIS231, ASP251, ASP262, ASN327, LEU328 and 14 more

Residues it binds most

HIS 2, ALA 2, ASN 2, ASP 2, GLU 2, PHE 2, GLN 2, GLY 2, ILE 2, LEU 2 (residue and the binding sites it lines).

Found with

  • CO · Cobalt (II) ion
  • TBU · Tertiary-butyl alcohol

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