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Ligand · T5V

T5V · pyrimidin-5-amine

T5V, pyrimidin-5-amine (C4 H5 N3, 95.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
T5V
Formula
C4 H5 N3
Class
ligand
Structures
4
PDB entries
2

Binding sites

T5V in 4 structures; the first of them:

  • 5RF3 · PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in… · T5V A404 · binds PHE140, LEU141, ASN142, SER144, CYS145, HIS163, GLU166, HIS172
  • 5S7A · XChem group deposition -- Crystal Structure of human ACVR1 in complex with PK012456b · T5V A509 · binds THR254, ILE323, PHE324, GLY325, GLY328, LYS329, PRO330
  • 5RF3 · Pandda analysis group deposition -- crystal structure of SARS-cov-2 main protease in… · T5V A404 · binds PHE140, LEU141, ASN142, SER144, CYS145, HIS163, GLU166
  • 5S7A · Xchem group deposition -- crystal structure of human ACVR1 in complex with PK012456B · T5V A509 · binds THR254, ILE323, PHE324, GLY325, GLY328, LYS329, PRO330

Residues it binds most

PHE 8, GLU 6, GLY 2, VAL 2, HIS 2, SER 3, THR 3, ASN 2, ASP 2, CYS 2 (residue and the binding sites it lines).

Found with

  • DMS · Dimethyl sulfoxide
  • LU8 · 4-methyl-3-[4-(1-methylpiperidin-4-yl)phenyl]-5-(3,4,5-trimethoxyphenyl)pyridine
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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