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Ligand · T2W

T2W · [(~{Z},2~{S})-5-[[4-[(2~{E},4~{E})-3-methyl-5-[(2~{S}, 4~{R})-4,6,6-trimethyl-4-oxidanyl-oxan-2-yl]penta-2,4-dienyl]cyclohexyl]amino]-5-oxidanylidene-pent-3-en-2-yl] ~{N}-methylcarbamate

T2W, [(~{Z},2~{S})-5-[[4-[(2~{E},4~{E})-3-methyl-5-[(2~{S}, 4~{R})-4,6,6-trimethyl-4-oxidanyl-oxan-2-yl]penta-2,4-dienyl]cyclohexyl]amino]-5-oxidanylidene-pent-3-en-2-yl] ~{N}-methylcarbamate, in the MolNFT structures on GenesisL1: bound…

Component
T2W
Class
ligand
Structures
2
PDB entries
2

Binding sites

T2W in 2 structures; the first of them:

  • 7B92 · Structure of a minimal SF3B core in complex with sudemycin D6 (form II) · T2W D104 · binds LEU1066, ALA1068, LYS1071, ARG1074, ARG1075, VAL1078, GLN1107, VAL1110 and 5 more
  • 7OMF · Structure of a minimal SF3B core in complex with sudemycin D6 (form I) · T2W D104 · binds LEU1066, LYS1067, HIS1069, LYS1071, ARG1074, VAL1078, VAL1110, CYS1111 and 7 more

Residues it binds most

LYS 2, VAL 2, ARG 2, CYS 2, LEU 2, TYR 2, ALA 1, GLN 1, GLY 1, HIS 1 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • SCN · Thiocyanate ion

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