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Ligand · SVD

SVD · (5~{R})-5-~{tert}-butyl-2-methyl-1-oxidanyl-pyrazolidin-3-one

SVD, (5~{R})-5-~{tert}-butyl-2-methyl-1-oxidanyl-pyrazolidin-3-one (C8 H16 N2 O2, 172.2 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it…

Component
SVD
Formula
C8 H16 N2 O2
Class
ligand
Structures
1
PDB entries
1

Binding sites

SVD in 1 structure; the first of them:

  • 5RA3 · Pandda analysis group deposition FORM1 MAP kinase P38-alpha -- fragment N10836B in… · SVD A401 · binds LEU122, HIS126, VAL158, CYS162

Residues it binds most

CYS 1, HIS 1, LEU 1, VAL 1 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • CL · Chloride ion
  • SO4 · Sulfate ion
  • DMS · Dimethyl sulfoxide

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