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Ligand · SSJ

SSJ · 2'-deoxy-5-[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)ethynyl]uridine 5'-(tetrahydrogen triphosphate)

SSJ, 2'-deoxy-5-[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)ethynyl]uridine 5'-(tetrahydrogen triphosphate) (C19 H28 N3 O15 P3, 631.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every…

Component
SSJ
Formula
C19 H28 N3 O15 P3
Class
ligand
Structures
2
PDB entries
1

Binding sites

SSJ in 2 structures; the first of them:

  • 3OJU · Snapshot of the large fragment of DNA polymerase I from Thermus Aquaticus processing c5… · SSJ A1 · binds ARG573, VAL586, ARG587, ASP610, TYR611, SER612, GLN613, ILE614 and 13 more
  • 3OJU · Snapshot of the large fragment of DNA polymerase I from thermus aquaticus processing C5… · SSJ A1 · binds ARG573, VAL586, ARG587, ASP610, TYR611, SER612, GLN613, ILE614 and 13 more

Residues it binds most

ARG 2, ASP 2, TYR 2, DA 2, DC 2, DG 2, DOC 2, GLN 2, GLU 2, HIS 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • GOL · Glycerol
  • PGE · Triethylene glycol

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