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Ligand · SSD

SSD · 1,4-dideoxy-1,4-[[2R,3R)-2,4-dihydroxy-3-(sulfoxy)butyl]episulfoniumylidene]-D-arabinitol inner salt

SSD, 1,4-dideoxy-1,4-[[2R,3R)-2,4-dihydroxy-3-(sulfoxy)butyl]episulfoniumylidene]-D-arabinitol inner salt (C9 H18 O9 S2 -2, 334.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with…

Component
SSD
Formula
C9 H18 O9 S2 -2
Class
ligand
Structures
4
PDB entries
2

Binding sites

SSD in 4 structures; the first of them:

  • 1TQT · Golgi alpha-Mannosidase II In Complex With A Diastereomer of Salacinol · SSD A1201 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, TYR269, ASP340 and 8 more
  • 3L4Z · Crystal complex of N-terminal Human Maltase-Glucoamylase with Salacinol · SSD A1001 · binds ASP203, TYR299, ASP327, ILE328, ILE364, TRP406, TRP441, ASP443 and 7 more
  • 1TQT · Golgi alpha-mannosidase II in complex with a diastereomer of salacinol · SSD A1201 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, TYR269, ASP340 and 8 more
  • 3L4Z · Crystal complex of N-terminal human maltase-glucoamylase with salacinol · SSD A1001 · binds ASP203, TYR299, ASP327, ILE328, ILE364, TRP406, TRP441, ASP443 and 7 more

Residues it binds most

ASP 4, TRP 4, ARG 4, HIS 4, PHE 4, TYR 4, ILE 2, GLY 2, MET 2, THR 2 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • ZN · Zinc ion
  • GOL · Glycerol
  • MRD · (4R)-2-methylpentane-2,4-diol

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