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Ligand · SS9

SS9 · 5-[(3-aminopropyl)amino]pentane-1-thiol

SS9, 5-[(3-aminopropyl)amino]pentane-1-thiol (C8 H20 N2 S, 176.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
SS9
Formula
C8 H20 N2 S
Class
ligand
Structures
4
PDB entries
3

Binding sites

SS9 in 4 structures; the first of them:

  • 6UII · Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with… · SS9 A701 · binds PRO23, ALA24, ASP94, HIS136, HIS137, GLY145, PHE146, ASP174 and 6 more
  • 6PHR · Crystal structure of marinobacter subterrani acetylpolyamine amidohydrolase (msapah)… · SS9 A502 · binds GLU17, LEU18, ASP19, ASP117, HIS158, HIS159, GLY167, TYR168 and 7 more
  • 6UII · Crystal structure of danio rerio histone deacetylase 10 in complex with… · SS9 A701 · binds ALA24, ASP94, HIS136, HIS137, GLY145, PHE146, ASP174, HIS176 and 5 more
  • 6UIJ · Crystal structure of danio rerio histone deacetylase 10 in complex with… · SS9 A701 · binds ALA24, ASP94, HIS136, HIS137, GLY145, PHE146, ASP174, HIS176 and 5 more

Residues it binds most

ASP 5, HIS 5, GLY 5, PHE 5, GLU 5, TYR 3, ALA 3, TRP 3, LEU 2, PRO 1 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • ZN · Zinc ion
  • PO4 · Phosphate ion
  • MG · Magnesium ion
  • MES · 2-(N-morpholino)-ethanesulfonic acid

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