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Ligand · SKD

SKD · 2-acetylamino-7-(1,2-dihydroxy-ethyl)-3-hydroxy-6,8-dioxa-bicyclo[3.2.1]octane-5-carboxylic acid

SKD, 2-acetylamino-7-(1,2-dihydroxy-ethyl)-3-hydroxy-6,8-dioxa-bicyclo[3.2.1]octane-5-carboxylic acid (C11 H17 N O8, 291.3 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding site with its residues…

Component
SKD
Formula
C11 H17 N O8
Class
ligand
Structures
1
PDB entries
1

Binding sites

SKD in 1 structure; the first of them:

  • 4X4A · Crystal structure of the intramolecular trans-sialidase from Ruminococcus gnavus in… · SKD A801 · binds ARG257, ILE258, ARG276, ASP282, ILE338, ASP339, ASP356, MET358 and 9 more

Residues it binds most

ARG 1, ASP 1, ILE 1, SER 1, TYR 1, GLU 1, MET 1, THR 1, TRP 1 (residue and the binding sites it lines).

Found with

  • ACE · Acetyl group
  • PO4 · Phosphate ion
  • GOL · Glycerol

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