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Ligand · SK3

SK3 · (1R,2R,3S,4S,5R)-5-(benzylamino)cyclopentane-1,2,3,4-tetrol

SK3, (1R,2R,3S,4S,5R)-5-(benzylamino)cyclopentane-1,2,3,4-tetrol (C12 H17 N O4, 239.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds…

Component
SK3
Formula
C12 H17 N O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

SK3 in 2 structures; the first of them:

  • 2F7R · Golgi alpha-mannosidase II complex with benzyl-aminocyclopentitetrol · SK3 A5009 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, SER268, TYR269 and 7 more
  • 2F7R · Golgi alpha-mannosidase II complex with benzyl-aminocyclopentitetrol · SK3 A5009 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, SER268, TYR269 and 7 more

Residues it binds most

ASP 2, HIS 2, TYR 2, ARG 2, PHE 2, SER 2, THR 2, TRP 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • MPD · (4S)-2-methyl-2,4-pentanediol

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