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Ligand · SFD

SFD · (S)-10-((2S,3S,4R)-5-((S)-((S)-(((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryloxy)(hydroxy)phosphoryloxy)-2,3,4-trihydroxypentyl)-7,8-dimethyl-2,4-dioxo-2,3,4,4A-tetrahydrobenzo[g]pteridine-5(10H)-sulfonic acid

SFD, (S)-10-((2S,3S,4R)-5-((S)-((S)-(((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl)methoxy)(hydroxy)phosphoryloxy)(hydroxy)phosphoryloxy)-2,3,4-trihydroxypentyl)-7,8-dimethyl-2,4-dioxo-2,3,4,4A-tetrahydrobenzo[…

Component
SFD
Formula
C27 H35 N9 O18 P2 S
Class
ligand
Structures
10
PDB entries
5

Binding sites

SFD in 10 structures; the first of them:

  • 2FJB · Adenosine-5'-phosphosulfate reductase im complex with products · SFD A1000 · binds ILE28, GLY29, GLY30, GLY31, PHE32, SER33, GLY34, VAL55 and 37 more
  • 2FJD · adenosine-5-phosphosulfate reductase in complex with sulfite (covalent adduct) · SFD A1000 · binds ILE28, GLY29, GLY30, GLY31, PHE32, SER33, GLY34, VAL55 and 38 more
  • 2VFV · Alditol Oxidase from Streptomyces coelicolor A3(2): Complex with Sulphite · SFD A1418 · binds TRP9, ARG40, VAL41, LEU42, GLY43, SER44, GLY45, HIS46 and 34 more
  • 3LSM · Pyranose 2-oxidase H167A mutant with flavin N(5) sulfite adduct · SFD A801 · binds VAL52, GLY53, SER54, GLY55, PRO56, ILE57, GLY58, PHE75 and 36 more
  • 4U2L · Dithionite reduced cholesterol in complex with sulfite · SFD A604 · binds ILE16, GLY17, THR18, GLY19, TYR20, GLY21, LEU39, GLU40 and 35 more
  • 2FJB · Adenosine-5'-phosphosulfate reductase im complex with products · SFD A1000 · binds ILE28, GLY29, GLY30, GLY31, PHE32, SER33, GLY34, VAL55 and 37 more
  • 2FJD · Adenosine-5-phosphosulfate reductase in complex with sulfite (covalent adduct) · SFD A1000 · binds ILE28, GLY29, GLY30, GLY31, PHE32, SER33, GLY34, VAL55 and 38 more
  • 2VFV · Alditol oxidase from streptomyces coelicolor A3(2): complex with sulphite · SFD A1418 · binds TRP9, ARG40, VAL41, LEU42, GLY43, SER44, GLY45, HIS46 and 34 more
  • 3LSM · Pyranose 2-oxidase H167A mutant with flavin N(5) sulfite adduct · SFD A801 · binds VAL52, GLY53, SER54, GLY55, PRO56, ILE57, GLY58, PHE75 and 36 more
  • 4U2L · Dithionite reduced cholesterol in complex with sulfite · SFD A604 · binds ILE16, GLY17, THR18, GLY19, TYR20, GLY21, LEU39, GLU40 and 35 more

Residues it binds most

GLY 16, SER 16, ALA 16, VAL 16, PHE 16, ILE 16, THR 16, HIS 16, LEU 16, ARG 16 (residue and the binding sites it lines).

Found with

  • SF4 · Iron/sulfur cluster
  • AMP · Adenosine monophosphate
  • NA · Sodium ion
  • GLC · alpha-D-glucopyranose
  • CL · Chloride ion
  • SO3 · Sulfite ion
  • SO4 · Sulfate ion
  • 12P · Dodecaethylene glycol

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