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Ligand · SF0

SF0 · [5-(5,6-dimethyl-1H-benzimidazol-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl 1-{3-[3,14,19-tris(2-amino-2-oxoethyl)-8,13,18-tris(3-amino-3-oxopropyl)-1,4,6,9,9,14,16,19-octamethyl-20,21,22,23-tetraazapentacyclo[15.2.1.1~2,5~.1~7,10~.1~12,15~]tricosa-5(23),6,10,12(21),15,17(20)-hexaen-4-yl-kappa~4~N~20~,N~21~,N~22~,N~23~]propanamido}propan-2-yl hydrogenato phosphate]rhodium (non-preferred name)

SF0, [5-(5,6-dimethyl-1H-benzimidazol-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl 1-{3-[3,14,19-tris(2-amino-2-oxoethyl)-8,13,18-tris(3-amino-3-oxopropyl)-1,4,6,9,9,14,16,19-octamethyl-20,21,22,23-tetraazapentacyclo[15.2.1.1~2,5~.1~7,10~.1…

Component
SF0
Formula
C62 H89 N13 O14 P Rh
Class
ligand
Structures
1
PDB entries
1

Binding sites

SF0 in 1 structure; the first of them:

  • 8D32 · Mycobacterium tuberculosis pduO-type ATP:cobalamin adenosyltransferase bound to… · SF0 A201 · binds PHE117, VAL118, PRO120, HIS130, ARG133, ARG137, SER166, ASP167 and 4 more

Residues it binds most

ARG 1, PHE 1, PRO 1, ASP 1, GLY 1, HIS 1, SER 1, TRP 1, VAL 1 (residue and the binding sites it lines).

Found with

  • 3PO · Triphosphate
  • 5AD · 5'-deoxyadenosine
  • MG · Magnesium ion

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