GL1X · GenesisL1 explorer

Ligand · SDL

SDL · 2-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-7-prop-2-enyl-1~{H}-purine-6,8-dione

SDL, 2-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-7-prop-2-enyl-1~{H}-purine-6,8-dione (C13 H17 N5 O6, 339.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every…

Component
SDL
Formula
C13 H17 N5 O6
Class
ligand
Structures
2
PDB entries
1

Binding sites

SDL in 2 structures; the first of them:

  • 5GMG · Crystal structure of monkey TLR7 in complex with loxoribine and polyU · SDL B901 · binds THR532, ASP555, LEU557, GLY584, ILE585, THR586, TYR264, PHE351 and 8 more
  • 5GMG · Crystal structure of monkey TLR7 in complex with loxoribine and polyu · SDL B901 · binds THR532, ASP555, LEU557, GLY584, ILE585, THR586, TYR264, PHE351 and 8 more

Residues it binds most

LEU 4, LYS 4, PHE 4, THR 4, TYR 4, ASP 4, GLN 4, GLU 4, GLY 4, ILE 4 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PO4 · Phosphate ion

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