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Ligand · RYD

RYD · (1-methylbenzotriazol-5-yl)methanol

RYD, (1-methylbenzotriazol-5-yl)methanol (C8 H9 N3 O, 163.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
RYD
Formula
C8 H9 N3 O
Class
ligand
Structures
3
PDB entries
2

Binding sites

RYD in 3 structures; the first of them:

  • 5S8C · XChem group deposition -- Crystal Structure of the second bromodomain of pleckstrin… · RYD A1501 · binds PHE1341, VAL1345, TYR1350, SER1392, TYR1395, THR1396, PRO1397, SER1401 and 2 more
  • 5R68 · Xchem group deposition -- crystal structure of human YEATS4 in complex with FM000199E · RYD B202 · binds HIS43, SER73, TYR74, GLY92, TRP93, GLY94, PHE96
  • 5S8C · Xchem group deposition -- crystal structure of the second bromodomain of pleckstrin… · RYD A1501 · binds PHE1341, VAL1345, TYR1350, SER1392, TYR1395, THR1396, PRO1397, SER1401 and 1 more

Residues it binds most

TYR 4, SER 4, GLY 2, PHE 4, HIS 2, ILE 2, PRO 2, THR 2, TRP 2, VAL 2 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol

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