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Ligand · RVK

RVK · Adenosine 5'-diphosphoric acid beta-[(3beta,4beta-dihydroxy-5beta-methoxytetrahydrofuran-2alpha-yl) methyl] estere

RVK, Adenosine 5'-diphosphoric acid beta-[(3beta,4beta-dihydroxy-5beta-methoxytetrahydrofuran-2alpha-yl) methyl] estere (C16 H25 N5 O14 P2, 573.4 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every…

Component
RVK
Formula
C16 H25 N5 O14 P2
Class
ligand
Structures
3
PDB entries
2

Binding sites

RVK in 3 structures; the first of them:

  • 7AQM · ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with… · RVK A403 · binds GLU33, ASP63, ASP64, GLY101, TYR102, GLY103, ALA104, GLY105 and 14 more
  • 8AZN · Structure of SARS-CoV-2 NSP3 macrodomain in complex with alpha-1-O-Me-ADPR · RVK A201 · binds ALA21, ASP22, ILE23, ALA38, ALA39, ASN40, LYS44, HIS45 and 18 more
  • 7AQM · ADP-ribosylserine hydrolase ARH3 of latimeria chalumnae in complex with… · RVK A403 · binds GLU33, ASP63, ASP64, GLY101, GLY103, ALA104, GLY105, VAL106 and 11 more

Residues it binds most

GLY 5, ASP 5, ALA 5, PHE 5, SER 5, TYR 4, VAL 5, ASN 5, HIS 5, ILE 4 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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