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Ligand · RPO

RPO · (1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-4-O-benzyl-2-deoxy-alpha-D-glucopyranoside

RPO, (1R,2R,3S,4R,6S)-4,6-diamino-2-{[3-O-(2,6-diamino-2,6-dideoxy-beta-L-idopyranosyl)-beta-D-ribofuranosyl]oxy}-3-hydroxycyclohexyl 2-amino-4-O-benzyl-2-deoxy-alpha-D-glucopyranoside (C30 H51 N5 O14, 705.8 g/mol), in the MolNFT…

Component
RPO
Formula
C30 H51 N5 O14
Class
ligand
Structures
2
PDB entries
1

Binding sites

RPO in 2 structures; the first of them:

  • 4B3S · Crystal structure of the 30S ribosome in complex with compound 37 · RPO A2800 · binds G1405, U1406, C1407, A1408, C1409, G1489, C1490, G1491 and 6 more
  • 4B3S · Crystal structure of the 30S ribosome in complex with compound 37 · RPO A2800 · binds G1405, U1406, C1407, A1408, C1409, G1489, C1490, G1491 and 6 more

Residues it binds most

C 2, G 2, A 2, U 2, THR 2 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • MG · Magnesium ion
  • ZN · Zinc ion

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