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Ligand · RPI

RPI · phospho-arginine

RPI, phospho-arginine (C6 H15 N4 O5 P, 254.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
RPI
Formula
C6 H15 N4 O5 P
Class
ligand
Structures
4
PDB entries
4

Binding sites

RPI in 4 structures; the first of them:

  • 5HBN · ClpC N-terminal domain with bound phospho-arginine · RPI A206 · binds ASN28, GLY30, THR31, GLU32, THR81, ARG83, ALA84, GLY118 and 1 more
  • 6FH3 · Protein arginine kinase McsB in the pArg-bound state · RPI A401 · binds VAL283, ASP285, SER286, LYS287, PRO322, PRO335, GLU336, ARG338 and 3 more
  • 6FH4 · CtsR C-terminal domain with bound phospho-arginine · RPI A201 · binds SER95, GLN96, ARG126, LEU133, ARG136, ASP137, ARG140
  • 8B9O · Structure of the C-terminal domain of ClpC2 from Mycobacterium smegmatis · RPI A301 · binds THR103, PRO104, ARG105, ALA106, GLY140, LEU141, ALA142, TYR197 and 3 more

Residues it binds most

ARG 8, ASP 5, GLY 3, THR 3, SER 6, PRO 3, ALA 3, GLN 4, GLU 4, LEU 4 (residue and the binding sites it lines).

Found with

  • PO4 · Phosphate ion
  • SO4 · Sulfate ion
  • ACT · Acetate ion
  • EDO · 1,2-ethanediol

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