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Ligand · RNS

RNS · L-rhamnose

RNS, L-rhamnose (C6 H12 O5, 164.2 g/mol), in the MolNFT structures on GenesisL1: bound in 16 records (8 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
RNS
Formula
C6 H12 O5
Class
sugar
Structures
16
PDB entries
8

Binding sites

RNS in 16 structures; the first of them:

  • 1DE6 · L-rhamnose isomerase · RNS A1462 · binds TRP48, VAL53, ILE67, HIS103, PHE144, TRP193, GLU234, LYS236 and 6 more
  • 1X8D · Crystal structure of E. coli YiiL protein containing L-rhamnose · RNS A1105 · binds MET8, TYR18, HIS22, LEU29, LEU33, TYR41, ILE43, TRP76 and 5 more
  • 2I56 · Crystal structure of L-Rhamnose Isomerase from Pseudomonas stutzeri with L-Rhamnose · RNS A2001 · binds TRP57, HIS101, TRP104, PHE131, TRP179, GLU219, LYS221, ASP254 and 5 more
  • 3ITT · Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329K in complex… · RNS A2001 · binds TRP57, HIS101, TRP104, PHE131, TRP179, GLU219, LYS221, ASP254 and 7 more
  • 3M0H · Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329F in complex… · RNS A2001 · binds TRP57, HIS101, TRP104, PHE131, TRP179, GLU219, LYS221, ASP254 and 6 more
  • 3M0V · Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329L in complex… · RNS A2001 · binds TRP57, HIS101, TRP104, PHE131, TRP179, GLU219, LYS221, ASP254 and 5 more
  • 3M0Y · Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329A in complex… · RNS A2001 · binds TRP57, HIS101, TRP104, PHE131, TRP179, GLU219, LYS221, ASP254 and 5 more
  • 4GJI · Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex… · RNS A1001 · binds TRP57, ASN101, TRP104, PHE131, TRP179, GLU219, LYS221, ASP254 and 5 more
  • 1DE6 · L-rhamnose isomerase · RNS A1462 · binds TRP48, VAL53, ILE67, HIS103, PHE144, TRP193, GLU234, LYS236 and 6 more
  • 1X8D · Crystal structure of E. COLI yiil protein containing L-rhamnose · RNS A1105 · binds MET8, TYR18, HIS22, LEU29, LEU33, TYR41, ILE43, TRP76 and 5 more

Residues it binds most

TRP 64, ASP 56, HIS 64, PHE 64, LYS 56, GLU 56, MET 8, ILE 16, LEU 8, TYR 8 (residue and the binding sites it lines).

Found with

  • MN · Manganese (II) ion
  • ZN · Zinc ion
  • RM4 · beta-L-rhamnopyranose
  • RAM · alpha-L-rhamnopyranose

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