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Ligand · RED

RED · Dihydrolipoic acid

RED, Dihydrolipoic acid (C8 H16 O2 S2, 208.3 g/mol), in the MolNFT structures on GenesisL1: bound in 15 records (8 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
RED
Formula
C8 H16 O2 S2
Class
ligand
Structures
15
PDB entries
8

Binding sites

RED in 15 structures; the first of them:

  • 1DXM · Reduced form of the H protein from glycine decarboxylase complex · RED A163 · binds HIS13, HIS30, ALA31, HIS34, LEU35, SER61, LYS63, ALA64 and 3 more
  • 1WOR · Crystal Structure of T-protein of the Glycine Cleavage System · RED A900 · binds VAL18, PHE20, LEU27, HIS50, MET51, ASN112, TYR188, LEU224 and 4 more
  • 1Y8N · Crystal structure of the PDK3-L2 complex · RED B373 · binds LEU27, GLN31, PHE32, PHE35, SER45, PHE48, LEU49, LEU164 and 2 more
  • 1Y8O · Crystal structure of the PDK3-L2 complex · RED B373 · binds LEU27, GLN31, PHE32, PHE35, THR44, SER45, PHE48, LEU49 and 3 more
  • 1Y8P · Crystal structure of the PDK3-L2 complex · RED B373 · binds LEU27, GLN31, PHE32, PHE35, SER45, PHE48, LEU49, LYS173
  • 2PNR · Crystal Structure of the asymmetric Pdk3-l2 Complex · RED C900 · binds ARG397, ALA399, LEU27, GLN31, PHE32, PHE35, PHE48, LEU49 and 2 more
  • 2Q8I · Pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug radicicol · RED B300 · binds LEU27, GLN31, PHE32, PHE35, THR44, SER45, PHE48, LEU49 and 3 more
  • 8TQ0 · Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with… · RED A801 · binds SER531, HIS573, HIS574, GLY582, PHE583, ASP612, HIS614, PHE643 and 4 more
  • 1DXM · Reduced form of the H protein from glycine decarboxylase complex · RED A163 · binds HIS13, HIS30, ALA31, HIS34, LEU35, SER61, LYS63, ALA64 and 3 more
  • 1WOR · Crystal structure of T-protein of the glycine cleavage system · RED A900 · binds VAL18, PHE20, LEU27, HIS50, MET51, ASN112, TYR188, LEU224 and 4 more
  • 1Y8N · Crystal structure of the PDK3-L2 complex · RED B373 · binds LEU27, GLN31, PHE32, PHE35, SER45, PHE48, LEU49, LEU164 and 2 more
  • 1Y8O · Crystal structure of the PDK3-L2 complex · RED B373 · binds LEU27, GLN31, PHE32, PHE35, THR44, SER45, PHE48, LEU49 and 3 more
  • 1Y8P · Crystal structure of the PDK3-L2 complex · RED B373 · binds LEU27, GLN31, PHE32, PHE35, SER45, PHE48, LEU49, LYS173
  • 2PNR · Crystal structure of the asymmetric PDK3-L2 complex · RED C900 · binds ARG397, ALA399, LEU27, GLN31, PHE32, PHE35, PHE48, LEU49 and 2 more
  • 2Q8I · Pyruvate dehydrogenase kinase isoform 3 in complex with antitumor drug radicicol · RED B300 · binds LEU27, GLN31, PHE32, PHE35, THR44, SER45, PHE48, LEU49 and 3 more

Residues it binds most

LEU 18, PHE 16, GLN 12, LYS 16, HIS 8, SER 14, ALA 4, ARG 6, ASP 6, THR 8 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • MG · Magnesium ion
  • ADP · Adenosine-5'-diphosphate
  • ATP · Adenosine-5'-triphosphate
  • RDC · Radicicol
  • GOL · Glycerol
  • ZN · Zinc ion

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