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Ligand · RDY

RDY · N-[(benzyloxy)carbonyl]-N-methyl-L-alanine

RDY, N-[(benzyloxy)carbonyl]-N-methyl-L-alanine (C12 H15 N O4, 237.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
RDY
Formula
C12 H15 N O4
Class
ligand
Structures
2
PDB entries
2

Binding sites

RDY in 2 structures; the first of them:

  • 5R2B · Pandda analysis group deposition -- endothiapepsin in complex with fragment F2X-entry… · RDY A401 · binds TYR185, THR186, ALA187, THR324
  • 5RCD · Pandda analysis group deposition -- endothiapepsin changed state model for fragment… · RDY A401 · binds TYR185, ALA187, THR324

Residues it binds most

THR 2, ALA 2, TYR 2 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • ACT · Acetate ion
  • DMS · Dimethyl sulfoxide
  • GOL · Glycerol
  • PG4 · Tetraethylene glycol

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