Ligand · RDL
RDL · 6,7-dioxo-5H-8-ribitylaminolumazine
RDL, 6,7-dioxo-5H-8-ribitylaminolumazine (C11 H14 N4 O8, 330.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…
- Component
- RDL
- Formula
- C11 H14 N4 O8
- Class
- ligand
- Structures
- 4
- PDB entries
- 2
Binding sites
RDL in 4 structures; the first of them:
- 1NQU · Crystal Structure of Lumazine Synthase from Aquifex aeolicus in Complex with Inhibitor… · RDL A1201 · binds SER20, PHE22, ASN23, PRO54, GLY55, SER56, TRP57, GLU58 and 9 more
- 2B99 · Crystal Structure of an archaeal pentameric riboflavin synthase Complex with a Substrate… · RDL A1205 · binds PHE12, PRO40, GLY41, ILE42, LYS43, ASP44, MET66, PRO67 and 6 more
- 1NQU · Crystal structure of lumazine synthase from aquifex aeolicus in complex with inhibitor… · RDL A1201 · binds SER20, PHE22, ASN23, PRO54, GLY55, SER56, TRP57, GLU58 and 9 more
- 2B99 · Crystal structure of an archaeal pentameric riboflavin synthase complex with a substrate… · RDL A1205 · binds PHE12, PRO40, GLY41, ILE42, LYS43, ASP44, MET66, PRO67 and 6 more
Residues it binds most
PHE 30, ILE 20, HIS 30, GLU 30, GLY 24, ASP 20, PRO 20, SER 10, LYS 18, ALA 16 (residue and the binding sites it lines).
Found with
- PO4 · Phosphate ion
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