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Ligand · RBY

RBY · Methylene adp-beta-xylose

RBY, Methylene adp-beta-xylose (C16 H25 N5 O13 P2, 557.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
RBY
Formula
C16 H25 N5 O13 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

RBY in 2 structures; the first of them:

  • 2YVP · Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8 · RBY A186 · binds PRO16, VAL17, ALA43, PHE45, GLN60, ARG62, ALA74, GLY75 and 9 more
  • 2YVP · Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8 · RBY A186 · binds PRO16, VAL17, ALA43, PHE45, GLN60, ARG62, ALA74, GLY75 and 9 more

Residues it binds most

GLU 2, ALA 2, GLY 2, PHE 2, VAL 2, ARG 2, GLN 2, LYS 2, PRO 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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