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Ligand · RBL

RBL · D-ribulose

RBL, D-ribulose (C5 H10 O5, 150.1 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
RBL
Formula
C5 H10 O5
Class
ligand
Structures
3
PDB entries
2

Binding sites

RBL in 3 structures; the first of them:

  • 5HV7 · Putative sugar kinases from Synechococcus elongatus PCC7942 in complex with D-ribulose · RBL A501 · binds THR11, GLY70, THR71, SER72, TYR91, ASP221, SER222
  • 7ZEH · Human cytosolic 5' nucleotidase IIIB in complex with 3,4-diF-Bn7Guanine · RBL A402 · binds TYR60, TYR85, GLU88, ILE89, TRP106, THR202
  • 7ZEH · Human cytosolic 5' nucleotidase iiib in complex with 3,4-dif- BN7GUANINE · RBL A402 · binds TYR85, GLU88, TRP106, THR202

Residues it binds most

THR 10, TYR 8, GLU 8, TRP 8, ILE 5, GLY 2, SER 2, ASP 2, ALA 1, ARG 1 (residue and the binding sites it lines).

Found with

  • IPQ · N7-(3,4-difluorobenzyl) guanine
  • MG · Magnesium ion
  • PO4 · Phosphate ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol

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