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Ligand · R9V

R9V · (3-endo)-8-benzyl-8-azabicyclo[3.2.1]octan-3-ol

R9V, (3-endo)-8-benzyl-8-azabicyclo[3.2.1]octan-3-ol (C14 H19 N O, 217.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
R9V
Formula
C14 H19 N O
Class
ligand
Structures
4
PDB entries
3

Binding sites

R9V in 4 structures; the first of them:

  • 5R20 · PanDDA analysis group deposition -- Endothiapepsin in complex with fragment F2X-Entry… · R9V A401 · binds ILE10, ASP15, ALA16, SER115, GLU118, ASP119, THR223
  • 5RC0 · PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment… · R9V A405 · binds ILE10, ASP15, ALA16, SER115, GLU118, ASP119, ILE122, THR223
  • 5R20 · Pandda analysis group deposition -- endothiapepsin in complex with fragment F2X-entry… · R9V A401 · binds ILE10, ASP15, ALA16, SER115, GLU118, ASP119, THR223
  • 5RC0 · Pandda analysis group deposition -- endothiapepsin changed state model for fragment… · R9V A405 · binds ILE10, ASP15, ALA16, SER115, GLU118, ASP119, THR223
  • 7LDX · SARS-cov-2 main protease immature form - F2X entry library E06 fragment · R9V A509 · binds PRO132, ASN133, THR196, THR198, MET235, TYR239, GLU240, PRO241

Residues it binds most

ASP 4, THR 6, GLU 6, ILE 4, ALA 4, PRO 2, SER 4, ASN 2, MET 2, TYR 2 (residue and the binding sites it lines).

Found with

  • DMS · Dimethyl sulfoxide
  • ACT · Acetate ion
  • GOL · Glycerol
  • PG4 · Tetraethylene glycol
  • PEG · Di(hydroxyethyl)ether

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