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Ligand · R5K

R5K · N~1~-{(3R)-1-[2-(5-carbamimidamidopentanamido)ethyl]-1-azaspiro[5.5]undecan-3-yl}-N~2~-(4-chlorophenyl)ethanediamide

R5K, N~1~-{(3R)-1-[2-(5-carbamimidamidopentanamido)ethyl]-1-azaspiro[5.5]undecan-3-yl}-N~2~-(4-chlorophenyl)ethanediamide (C26 H40 Cl N7 O3, 534.1 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every…

Component
R5K
Formula
C26 H40 Cl N7 O3
Class
ligand
Structures
1
PDB entries
1

Binding sites

R5K in 1 structure; the first of them:

  • 8DCQ · Crystal structure of HIV-1 LM/HT clade A/E CRF01 GP120 core in complex with yir-821 · R5K A511 · binds TRP112, VAL255, SER256, THR257, GLU370, ILE371, THR375, PHE376 and 9 more

Residues it binds most

ASN 1, GLY 1, MET 1, PHE 1, THR 1, TRP 1, ASP 1, GLU 1, ILE 1, SER 1 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid

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