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Ligand · R5G

R5G · N-hydroxy-1-{[4-(hydroxycarbamoyl)phenyl]methyl}-1H-indole-6-carboxamide

R5G, N-hydroxy-1-{[4-(hydroxycarbamoyl)phenyl]methyl}-1H-indole-6-carboxamide (C17 H15 N3 O4, 325.3 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
R5G
Formula
C17 H15 N3 O4
Class
ligand
Structures
3
PDB entries
2

Binding sites

R5G in 3 structures; the first of them:

  • 6VNQ · Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with Bishydroxamic… · R5G A701 · binds GLU24, CYS25, ASN93, ALA94, HIS136, HIS137, GLY145, PHE146 and 7 more
  • 6VNQ · Crystal structure of danio rerio histone deacetylase 10 in complex with bishydroxamic… · R5G A701 · binds GLU24, CYS25, ASN93, ALA94, HIS136, HIS137, GLY145, PHE146 and 7 more
  • 6VNR · Crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 (CD2) complexed… · R5G A804 · binds SER531, HIS574, GLY582, PHE583, ASP612, HIS614, ALA641, PHE643 and 5 more

Residues it binds most

HIS 4, ASP 4, GLY 4, PHE 4, ASN 4, ALA 4, GLU 2, TYR 4, CYS 2, LEU 2 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • ZN · Zinc ion
  • EDO · 1,2-ethanediol
  • PO4 · Phosphate ion

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