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Ligand · R1E

R1E · trans-4,4-difluorocyclopentane-1,2-diol

R1E, trans-4,4-difluorocyclopentane-1,2-diol (C5 H8 F2 O2, 138.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
R1E
Formula
C5 H8 F2 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

R1E in 2 structures; the first of them:

  • 7A6D · tRNA-guanine transglycosylase C158S/C281S/Y330C/H333A mutant in complex with… · R1E A407 · binds GLY46, ALA53, LEU54, LYS55, PRO56, VAL59, ILE67, MET93 and 1 more
  • 7A6D · TRNA-guanine transglycosylase C158S/C281S/Y330C/H333A mutant in complex with… · R1E A407 · binds GLY46, LEU54, PRO56, VAL59, ILE67, MET93, TRP95

Residues it binds most

GLY 2, ILE 2, LEU 2, MET 2, PRO 2, TRP 2, VAL 2, ALA 1, LYS 1 (residue and the binding sites it lines).

Found with

  • RGN · (1~{R},2~{R})-4,4-bis(fluoranyl)cyclopentane-1,2-diol
  • ZN · Zinc ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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