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Ligand · PYM

PYM · Pyruvamide

PYM, Pyruvamide (C3 H5 N O2, 87.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
PYM
Formula
C3 H5 N O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

PYM in 2 structures; the first of them:

  • 1QPB · Pyruvate decarboyxlase from yeast (form B) complexed with pyruvamide · PYM A602 · binds TYR157, VAL158, GLN160, MET187, LEU189, ARG224, HIS225, ASP226
  • 1QPB · Pyruvate decarboyxlase from yeast (form B) complexed with pyruvamide · PYM A602 · binds TYR157, VAL158, GLN160, MET187, LEU189, ARG224, HIS225, ASP226

Residues it binds most

HIS 4, ASP 4, GLY 2, ARG 2, GLN 2, GLU 2, LEU 2, MET 2, THR 2, TYR 2 (residue and the binding sites it lines).

Found with

  • TPP · Thiamine diphosphate
  • MG · Magnesium ion

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