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Ligand · PTL

PTL · Pentanal

PTL, Pentanal (C5 H10 O, 86.1 g/mol), in the MolNFT structures on GenesisL1: bound in 7 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
PTL
Formula
C5 H10 O
Class
ligand
Structures
7
PDB entries
4

Binding sites

PTL in 7 structures; the first of them:

  • 1I2A · Crystal structure of L1 ribosomal protein from methanococcus jannaschii with 1.85A… · PTL A220 · binds ARG20, ASN21
  • 1REK · Crystal structure of cAMP-dependent protein kinase complexed with balanol analog 8 · PTL A352 · binds VAL15, PHE18, PHE100, LEU152, GLU155, TRP302, ILE303, TYR306
  • 1YKZ · Effect of alcohols on protein hydration · PTL X3784 · binds GLY4, ARG5, CYS6, GLU7
  • 1I2A · Crystal structure of L1 ribosomal protein from methanococcus jannaschii with 1.85A… · PTL A220 · binds ARG20, ASN21
  • 1REK · Crystal structure of camp-dependent protein kinase complexed with balanol analog 8 · PTL A352 · binds VAL15, PHE18, PHE100, LEU152, GLU155, TRP302, ILE303, TYR306
  • 1YKZ · Effect of alcohols on protein hydration · PTL X3784 · binds GLY4, ARG5, CYS6, GLU7
  • 2N63 · Structure of C4VG16KRKP · PTL A1 · binds VAL2, ALA3, ARG4, LEU12, GLY17

Residues it binds most

GLU 6, ILE 4, TRP 4, ARG 5, LEU 5, VAL 5, ASN 4, PHE 2, ALA 3, GLY 3 (residue and the binding sites it lines).

Found with

  • B8L · 3-[(3-sec-butyl-4-hydroxybenzoyl)amino]azepan-4-yl 4-(2-hydroxy-5-methoxybenzoyl)benzoate
  • NA · Sodium ion
  • CL · Chloride ion

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