GL1X · GenesisL1 explorer

Ligand · PPR

PPR · Phosphonopyruvate

PPR, Phosphonopyruvate (C3 H5 O6 P, 168.0 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
PPR
Formula
C3 H5 O6 P
Class
ligand
Structures
4
PDB entries
2

Binding sites

PPR in 4 structures; the first of them:

  • 1KC7 · Pyruvate Phosphate Dikinase with Bound Mg-phosphonopyruvate · PPR A1000 · binds LEU559, ARG561, ARG617, MET743, GLU745, GLY766, THR767, ASN768 and 3 more
  • 2HJP · Crystal Structure of Phosphonopyruvate Hydrolase Complex with Phosphonopyruvate and Mg++ · PPR A291 · binds TRP40, SER42, GLY43, PHE44, ASP54, ASP81, ARG155, HIS186 and 3 more
  • 1KC7 · Pyruvate phosphate dikinase with bound mg-phosphonopyruvate · PPR A1000 · binds LEU559, ARG561, ARG617, MET743, GLU745, GLY766, THR767, ASN768 and 3 more
  • 2HJP · Crystal structure of phosphonopyruvate hydrolase complex with phosphonopyruvate and mg++ · PPR A291 · binds TRP40, SER42, GLY43, PHE44, ASP54, ASP81, ARG155, HIS186 and 3 more

Residues it binds most

ARG 4, GLY 4, ASP 4, ASN 2, CYS 2, GLU 2, HIS 2, LEU 2, MET 2, PHE 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • NA · Sodium ion
  • XYS · alpha-D-xylopyranose
  • CL · Chloride ion
  • SO4 · Sulfate ion

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