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Ligand · PON

PON · Imido diphosphate

PON, Imido diphosphate (H3 N O6 P2 -2, 175.0 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
PON
Formula
H3 N O6 P2 -2
Class
ligand
Structures
4
PDB entries
2

Binding sites

PON in 4 structures; the first of them:

  • 1FFW · Chey-binding domain of chea in complex with chey with a bound imido diphosphate · PON A330 · binds ASP13, PHE14, SER15
  • 2Q7U · Crystal Structure of the F plasmid TraI Relaxase Domain with the Scissile Thymidine Base… · PON A3002 · binds ASP21, ASN22, TYR23, HIS146, ASP147, THR148, SER149
  • 1FFW · Chey-binding domain of chea in complex with chey with a bound imido diphosphate · PON A330 · binds ASP13, PHE14, SER15
  • 2Q7U · Crystal structure of the F plasmid trai relaxase domain with the scissile thymidine base… · PON A3002 · binds ASP21, ASN22, TYR23, HIS146, ASP147, THR148, SER149

Residues it binds most

ASP 4, SER 4, ASN 2, HIS 2, PHE 2, THR 2, TYR 2 (residue and the binding sites it lines).

Found with

  • TMP · Thymidine-5'-phosphate
  • MG · Magnesium ion
  • MN · Manganese (II) ion

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