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Ligand · PNW

PNW · 4-nitrophenyl beta-D-glucopyranoside

PNW, 4-nitrophenyl beta-D-glucopyranoside (C12 H15 N O8, 301.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
PNW
Formula
C12 H15 N O8
Class
sugar
Structures
5
PDB entries
3

Binding sites

PNW in 5 structures; the first of them:

  • 3AI0 · Crystal structure of beta-glucosidase from termite Neotermes koshunensis in complex with… · PNW A2001 · binds GLN45, HIS148, TRP149, ASN192, ASP193, THR196, ASN253, ASN255 and 10 more
  • 4M81 · The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from Candida… · PNW A502 · binds PHE144, ASN146, GLU192, LEU194, PRO196, PHE229, TYR255, PHE258 and 2 more
  • 7WDR · Crystal structures of MeBglD2 in complex with various saccharides · PNW A501 · binds GLN24, HIS125, TRP126, ASN169, GLU170, TRP172, VAL173, LEU177 and 11 more
  • 3AI0 · Crystal structure of beta-glucosidase from termite neotermes koshunensis in complex with… · PNW A2001 · binds GLN45, HIS148, TRP149, ASN192, ASP193, THR196, ASN253, ASN255 and 10 more
  • 4M81 · The structure of E292S glycosynthase variant of exo-1,3-beta-glucanase from candida… · PNW A502 · binds PHE144, ASN146, GLU192, LEU194, PRO196, PHE229, TYR255, PHE258 and 2 more

Residues it binds most

ASN 6, TRP 4, PHE 6, GLU 6, TYR 6, LEU 4, THR 3, HIS 3, ASP 3, GLN 3 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • GLF · alpha-D-glucopyranosyl fluoride
  • SO4 · Sulfate ion

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