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Ligand · PNT

PNT · 1,5-bis(4-amidinophenoxy)pentane

PNT, 1,5-bis(4-amidinophenoxy)pentane (C19 H24 N4 O2, 340.4 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component
PNT
Formula
C19 H24 N4 O2
Class
ligand
Structures
4
PDB entries
3

Binding sites

PNT in 4 structures; the first of them:

  • 1D64 · Crystal structure of a pentamidine-oligonucleotide complex: implications for DNA-binding… · PNT B25 · binds DG4, DA5, DA6, DT7, DT8, DC9, DG10, DG16 and 6 more
  • 7WP3 · Crystal structure of the complex of proliferating cell nuclear antigen (PCNA) from… · PNT A301 · binds MET40, HIS44, VAL45, SER125, PRO267, ALA285, ASP289
  • 8JY8 · Structure of TbAQP2 in complex with anti-trypanosomatid drug pentamidine · PNT A401 · binds ILE110, VAL114, LEU122, GLY126, GLY127, HIS128, LEU129, ASN130 and 14 more
  • 8OFY · Molecular Mechanism of trypanosomal AQP2 · PNT A401 · binds LEU84, ILE110, VAL114, LEU122, GLY126, GLY127, HIS128, LEU129 and 12 more
  • 7WP3 · Crystal structure of the complex of proliferating cell nuclear antigen (PCNA) from… · PNT A301 · binds HIS44, ALA285, ASP289

Residues it binds most

VAL 8, LEU 5, ASN 5, MET 8, GLY 7, ILE 5, ALA 9, HIS 9, PHE 5, DA 1 (residue and the binding sites it lines).

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