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Ligand · PLQ

PLQ · 1,4-benzoquinone

PLQ, 1,4-benzoquinone (C6 H4 O2, 108.1 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
PLQ
Formula
C6 H4 O2
Class
ligand
Structures
6
PDB entries
4

Binding sites

PLQ in 6 structures; the first of them:

  • 6C85 · Crystal structure of aspartate semialdehyde dehydrogenase from Blastomyces dermatitidis… · PLQ A401 · binds LYS111, ARG114, ASN153, CYS154, GLY186, LYS211
  • 7NNX · E. coli NfsA with 1,4-benzoqui · PLQ A308 · binds SER39, SER40, SER41
  • 6C85 · Crystal structure of aspartate semialdehyde dehydrogenase from blastomyces dermatitidis… · PLQ A401 · binds ARG114, ASN153, CYS154, GLY186, LYS211
  • 6S3Z · Structure of D80A-fructofuranosidase from xanthophyllomyces dendrorhous complexed with… · PLQ A1002 · binds TRP77, ASN79, TRP105, TRP393
  • 6S82 · Structure of D80A-fructofuranosidase from xanthophyllomyces dendrorhous complexed with… · PLQ A1001 · binds TRP105, TRP393
  • 7NNX · E. COLI nfsa with 1,4-benzoquinone · PLQ A308 · binds SER40, SER41

Residues it binds most

ALA 8, ASN 9, ARG 10, ASP 10, GLY 9, LYS 8, SER 5, TRP 4, VAL 5, PHE 7 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • FMN · Flavin mononucleotide
  • HQE · benzene-1,4-diol
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • CL · Chloride ion
  • DMS · Dimethyl sulfoxide
  • FRU · beta-D-fructofuranose
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol

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