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Ligand · PLB

PLB · 2-[(2,4-dichlorobenzoyl)amino]-5-(pyrimidin-2-yloxy)benzoic acid

PLB, 2-[(2,4-dichlorobenzoyl)amino]-5-(pyrimidin-2-yloxy)benzoic acid (C18 H11 Cl2 N3 O4, 404.2 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
PLB
Formula
C18 H11 Cl2 N3 O4
Class
ligand
Structures
8
PDB entries
5

Binding sites

PLB in 8 structures; the first of them:

  • 1WM0 · PPARgamma in complex with a 2-BABA compound · PLB X1 · binds ILE249, LEU255, GLU259, PHE264, HIS266, ILE267, ARG280, ILE281 and 14 more
  • 2Q6S · 2.4 angstrom crystal structure of PPAR gamma complexed to BVT.13 without co-activator… · PLB B5001 · binds ILE249, LEU255, GLU259, PHE264, HIS266, ARG280, ILE281, GLY284 and 13 more
  • 3DZU · Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis… · PLB D701 · binds ASP260, ILE262, ARG280, ILE281, GLY284, CYS285, ARG288, SER289 and 11 more
  • 8ZFN · Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and… · PLB A502 · binds ILE249, LEU255, PHE264, ARG280, ILE281, GLY284, CYS285, ARG288 and 11 more
  • 8ZFQ · Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and… · PLB A502 · binds LEU255, GLU259, PHE264, ARG280, ILE281, GLY284, CYS285, ARG288 and 11 more
  • 1WM0 · Ppargamma in complex with a 2-baba compound · PLB X1 · binds ILE249, LEU255, GLU259, PHE264, HIS266, ILE267, ARG280, ILE281 and 14 more
  • 2Q6S · 2.4 ångström crystal structure of ppar gamma complexed to BVT.13 without co-activator… · PLB B5001 · binds ILE249, LEU255, GLU259, PHE264, HIS266, ARG280, ILE281, GLY284 and 13 more
  • 3DZU · Intact ppar gamma - rxr alpha nuclear receptor complex on DNA bound with BVT.13, 9-cis… · PLB D701 · binds ASP260, ILE262, ARG280, ILE281, GLY284, CYS285, ARG288, SER289 and 11 more

Residues it binds most

LEU 10, ILE 10, MET 10, ARG 10, SER 10, CYS 10, GLY 10, PHE 8, VAL 8, ALA 6 (residue and the binding sites it lines).

Found with

  • 9CR · (9cis)-retinoic acid
  • ZN · Zinc ion
  • EEY · 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide
  • GW9 · 2-chloro-5-nitro-N-phenylbenzamide

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