Ligand · PEX

PEX · 1,2-didecanoyl-sn-glycero-3-phosphoethanolamine

PEX, 1,2-didecanoyl-sn-glycero-3-phosphoethanolamine (C25 H49 N O8 P -1, 522.6 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (7 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component: PEX
Formula: C25 H49 N O8 P -1
Class: ligand
Structures: 8
PDB entries: 7

Binding sites

PEX in 8 structures; the first of them:

7CNZ · Crystal structure of 10PE bound PSD from E. coli (2.70 A) · PEX B301 · binds ALA22, GLY25, ALA26, PHE41, TYR45, PHE63, TYR137, LEU138 and 12 more
8EKP · Apo rat TRPV2 in nanodiscs, state 1 · PEX A801 · binds MET468, ASP469, TYR471, PHE472, LEU475, LEU478, LEU507, LEU510 and 15 more
8EKQ · Apo rat TRPV2 in nanodiscs, state 2 · PEX A801 · binds PHE395, ASN396, CYS399, TYR400, TYR403, LEU443, GLY444, TYR447 and 7 more
8EKR · Apo rat TRPV2 in nanodiscs, state 3 · PEX A801 · binds PHE395, ASN396, CYS399, TYR400, VAL402, TYR403, GLY444, TYR447 and 8 more
8EKS · rat TRPV2 in nanodiscs in the presence of weak acid at pH 5 · PEX A801 · binds PHE395, ASN396, CYS399, TYR400, VAL402, TYR403, GLY444, TYR447 and 9 more
8FFL · Wildtype rat TRPV2 in nanodiscs bound to RR · PEX A801 · binds PHE395, ASN396, CYS399, TYR400, VAL402, TYR403, LEU440, LEU443 and 9 more
8FFM · Wildtype rat TRPV2 in nanodiscs bound to RR and 2-APB · PEX A801 · binds PHE395, ASN396, CYS399, TYR400, VAL402, TYR403, GLY444, TYR447 and 8 more
7CNZ · Crystal structure of 10PE bound psd from E. COLI (2.70 a) · PEX B301 · binds ALA22, GLY25, ALA26, PHE41, TYR45, PHE63, TYR137, LEU138 and 11 more

Residues it binds most

TYR 40, LEU 40, PHE 40, VAL 36, GLN 34, ASN 36, GLY 34, ALA 8, CYS 24, GLU 24 (residue and the binding sites it lines).

Found with

PO4 · Phosphate ion
FZ4 · 2-aminoethyl diphenylborinate
PYR · Pyruvic acid
R2R · ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)

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