Ligand · PDP
PDP · Pyridoxal-5'-diphosphate
PDP, Pyridoxal-5'-diphosphate (C8 H11 N O9 P2, 327.1 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…
- Component
- PDP
- Formula
- C8 H11 N O9 P2
- Class
- ligand
- Structures
- 4
- PDB entries
- 2
Binding sites
PDP in 4 structures; the first of them:
- 1ABB · Control of phosphorylase B conformation by a modified cofactor: crystallographic studies… · PDP A931 · binds TYR90, GLY134, GLY135, ARG138, TRP491, LYS568, ARG569, LYS574 and 10 more
- 1PYG · Structural basis for the activation of glycogen phosphorylase B by adenosine monophosphate · PDP A860 · binds TYR90, GLY134, GLY135, ARG138, TRP491, VAL567, LYS568, ARG569 and 11 more
- 1ABB · Control of phosphorylase B conformation by a modified cofactor: crystallographic studies… · PDP A931 · binds TYR90, GLY134, GLY135, ARG138, TRP491, LYS568, ARG569, LYS574 and 10 more
- 1PYG · Structural basis for the activation of glycogen phosphorylase B by adenosine monophosphate · PDP A860 · binds TYR90, GLY134, GLY135, ARG138, TRP491, VAL567, LYS568, ARG569 and 11 more
Residues it binds most
GLY 16, LYS 16, ARG 16, TYR 16, VAL 16, ALA 16, ASN 16, THR 16, TRP 16, GLU 14 (residue and the binding sites it lines).
Found with
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