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Ligand · PBM

PBM · Trimethyl lead ion

PBM, Trimethyl lead ion (C3 H9 Pb +1, 252.3 g/mol), in the MolNFT structures on GenesisL1: bound in 11 records (6 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
PBM
Formula
C3 H9 Pb +1
Class
ligand
Structures
11
PDB entries
6

Binding sites

PBM in 11 structures; the first of them:

  • 1EFN · HIV-1 nef protein in complex with R96I mutant fyn SH3 domain · PBM B710 · binds ARG188, PHE191, HIS192
  • 1OCX · E. coli maltose-O-acetyltransferase · PBM A1184 · binds SER2, THR3, GLU6
  • 1PS1 · Pentalenene synthase · PBM A500 · binds GLU89
  • 1TIF · Translation initiation factor 3 N-terminal domain · PBM A101 · binds GLN32, GLU33, GLU36
  • 4DL0 · Crystal Structure of the heterotrimeric EGChead Peripheral Stalk Complex of the Yeast… · PBM J301 · binds ILE97, GLU221, GLU153
  • 1EFN · HIV-1 nef protein in complex with R96I mutant fyn SH3 domain · PBM B710 · binds ARG188, PHE191, HIS192
  • 1OCX · E. COLI maltose-O-acetyltransferase · PBM A1184 · binds SER2, THR3, GLU6
  • 1PS1 · Pentalenene synthase · PBM A500 · binds GLU89
  • 1TIF · Translation initiation factor 3 N-terminal domain · PBM A101 · binds GLN32, GLU33, GLU36
  • 4DL0 · Crystal structure of the heterotrimeric egchead peripheral stalk complex of the yeast… · PBM J301 · binds ILE97, GLU221, GLU153
  • 5JPN · Structure of human complement C4 rebuilt using imdff · PBM A704 · binds ARG138, ASP221

Residues it binds most

GLU 17, ALA 6, HIS 8, PHE 8, LEU 7, ASN 6, THR 6, ASP 3, SER 5, PRO 2 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • SO4 · Sulfate ion
  • A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose
  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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