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Ligand · PAF

PAF · Pantoate

PAF, Pantoate (C6 H11 O4 -1, 147.2 g/mol), in the MolNFT structures on GenesisL1: bound in 16 records (10 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
PAF
Formula
C6 H11 O4 -1
Class
ligand
Structures
16
PDB entries
10

Binding sites

PAF in 16 structures; the first of them:

  • 1N2B · Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with… · PAF A1001 · binds PRO38, THR39, MET40, ASN69, GLN72, VAL139, VAL142, VAL143 and 2 more
  • 1N2E · Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with… · PAF A1001 · binds PRO38, THR39, MET40, ASN69, GLN72, VAL139, VAL142, VAL143 and 2 more
  • 1N2J · Crystal Structure of a Pantothenate Synthetase from M. tuberculosis in complex with… · PAF A1001 · binds PRO38, THR39, MET40, ASN69, GLN72, VAL139, VAL142, VAL143 and 2 more
  • 2OFP · Crystal structure of Escherichia coli ketopantoate reductase in a ternary complex with… · PAF A602 · binds ASN98, VAL179, ASN180, ILE183, ASN184, ASN194, VAL234, THR238 and 2 more
  • 3GUZ · Structural and substrate-binding studies of pantothenate synthenate (PS)provide insights… · PAF A177 · binds PRO28, THR29, MET30, ASN58, GLN61, VAL130, ILE133, VAL134 and 2 more
  • 3Q12 · Pantoate-beta-alanine ligase from Yersinia pestis in complex with pantoate. · PAF A501 · binds PRO28, THR29, MET30, ASN58, GLN61, VAL130, ILE133, VAL134 and 3 more
  • 4NQ8 · Crystal structure of a trap periplasmic solute binding protein from Bordetella… · PAF A401 · binds ALA33, LEU34, TYR40, GLU72, SER90, GLN145, ARG148, ARG169 and 4 more
  • 4PAK · CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM VERMINEPHROBACTER… · PAF A407 · binds SER43, THR44, GLN50, GLU82, SER100, ASN155, ARG158, ARG179 and 4 more
  • 4XEQ · CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM DESULFOVIBRIO… · PAF A401 · binds VAL45, THR46, GLN52, GLU84, THR102, ASN157, ARG160, ARG181 and 7 more
  • 8OYG · Crystal structure of ASBTNM in complex with pantoate · PAF A1003 · binds ILE47, GLY111, THR112, ALA113, ILE203, GLN264, ASN265, SER266 and 5 more
  • 1N2B · Crystal structure of a pantothenate synthetase from M. tuberculosis in complex with… · PAF A1001 · binds PRO38, THR39, MET40, ASN69, GLN72, VAL139, VAL142, VAL143 and 2 more
  • 1N2E · Crystal structure of a pantothenate synthetase from M. tuberculosis in complex with… · PAF A1001 · binds PRO38, THR39, MET40, ASN69, GLN72, VAL139, VAL142, VAL143 and 2 more
  • 1N2J · Crystal structure of a pantothenate synthetase from M. tuberculosis in complex with… · PAF A1001 · binds PRO38, THR39, MET40, ASN69, GLN72, VAL139, VAL142, VAL143 and 2 more
  • 2OFP · Crystal structure of escherichia COLI ketopantoate reductase in a ternary complex with… · PAF A602 · binds ASN98, VAL179, ASN180, ILE183, ASN184, ASN194, VAL234, THR238 and 2 more
  • 3GUZ · Structural and substrate-binding studies of pantothenate synthenate (PS)PROVIDE insights… · PAF A177 · binds PRO28, THR29, MET30, ASN58, GLN61, VAL130, ILE133, VAL134 and 2 more
  • 3Q12 · Pantoate-beta-alanine ligase from yersinia pestis in complex with pantoate. · PAF A501 · binds PRO28, THR29, MET30, ASN58, GLN61, VAL130, ILE133, VAL134 and 3 more

Residues it binds most

VAL 31, ASN 32, GLN 28, THR 32, PHE 21, MET 20, PRO 20, ILE 17, ARG 7, SER 8 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • EOH · Ethanol
  • GOL · Glycerol
  • APC · Diphosphomethylphosphonic acid adenosyl ester
  • MG · Magnesium ion
  • CL · Chloride ion
  • BAL · Beta-alanine
  • NAP · Nadp nicotinamide-adenine-dinucleotide phosphate
  • ACT · Acetate ion
  • DIO · 1,4-diethylene dioxide
  • CD · Cadmium ion
  • NA · Sodium ion

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