GL1X · GenesisL1 explorer

Ligand · P1D

P1D · ((2s,3as,4r,6s)-4-(hydroxymethyl)-6-(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)-tetrahydrofuro[3,4-d][1,3]dioxo L-2-yl)methylphosphonic acid

P1D, ((2s,3as,4r,6s)-4-(hydroxymethyl)-6-(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)-tetrahydrofuro[3,4-d][1,3]dioxo L-2-yl)methylphosphonic acid (C13 H16 N3 O8 P, 373.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2…

Component
P1D
Formula
C13 H16 N3 O8 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

P1D in 2 structures; the first of them:

  • 2AI2 · Purine nucleoside phosphorylase from calf spleen · P1D A293 · binds GLY32, SER33, ARG84, HIS86, TYR88, ASN115, ALA116, ALA117 and 12 more
  • 2AI2 · Purine nucleoside phosphorylase from calf spleen · P1D A293 · binds GLY32, SER33, ARG84, HIS86, TYR88, ASN115, ALA116, ALA117 and 12 more

Residues it binds most

GLY 2, VAL 2, ALA 2, ASN 2, HIS 2, SER 2, ARG 2, GLU 2, MET 2, PHE 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion
  • 144 · Tris-hydroxymethyl-methyl-ammonium

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