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Ligand · ORD

ORD · D-ornithine

ORD, D-ornithine (C5 H12 N2 O2, 132.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
ORD
Formula
C5 H12 N2 O2
Class
ligand
Structures
2
PDB entries
2

Binding sites

ORD in 2 structures; the first of them:

  • 8APZ · Crystal structure of wild-type L-N-Carbamoylase from Sinorhizobium meliloti · ORD A505 · binds HIS87, ASP98, GLU132, GLU133, ALA140, HIS194, GLN197, LEU217 and 8 more
  • 8G97 · Adenylation domain structure from NRPS-like Delta-Poly-L-Ornithine synthetase… · ORD A507 · binds ASP217, MET218, GLU221, GLY282, GLY283, THR304, GLY306, PRO307 and 3 more

Residues it binds most

HIS 2, GLY 4, GLU 4, ALA 2, ASP 4, THR 2, ARG 2, ASN 2, GLN 2, LEU 2 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • FE · Fe (III) ion
  • MG · Magnesium ion
  • ZN · Zinc ion
  • ACT · Acetate ion

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