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Ligand · OPM

OPM · pentyl alpha-D-mannopyranoside

OPM, pentyl alpha-D-mannopyranoside (C11 H22 O6, 250.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
OPM
Formula
C11 H22 O6
Class
sugar
Structures
2
PDB entries
1

Binding sites

OPM in 2 structures; the first of them:

  • 3GXY · Crystal structure of cyanovirin-n complexed to a synthetic hexamannoside · OPM C1 · binds THR25
  • 3GXY · Crystal structure of cyanovirin-N complexed to a synthetic hexamannoside · OPM C1 · binds THR25

Residues it binds most

THR 4, ARG 2, ASN 2, GLU 2, GLY 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • MAN · alpha-D-mannopyranose
  • NHE · 2-[N-cyclohexylamino]ethane sulfonic acid

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