Ligand · OIL

OIL · (2S,3S)-2-hydroxy-3-methylpentanoic acid

OIL, (2S,3S)-2-hydroxy-3-methylpentanoic acid (C6 H12 O3, 132.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component: OIL
Formula: C6 H12 O3
Class: ligand
Structures: 4
PDB entries: 4

Binding sites

OIL in 4 structures; the first of them:

3NWQ · X-ray structure of ester chemical analogue [O-ILE50,O-ILE50']HIV-1 protease complexed… · OIL A50 · binds GLY49, GLY51, GLY52, ILE47, GLY48, GLY49, GLY51, GLY52 and 4 more
3NWX · X-ray structure of ester chemical analogue [O-ILE50,O-ILE50']HIV-1 protease complexed… · OIL A50 · binds GLY49, GLY51, GLY52, VAL32, ILE47, GLY48, GLY49, GLY51 and 5 more
3NXE · X-ray structure of ester chemical analogue 'covalent dimer' [ILE50,O- ILE50']HIV-1… · OIL A154 · binds ILE47, GLY48, GLY49, ILE50, GLY51, GLY52, ILE54, THR80 and 5 more
3NXN · X-ray structure of ester chemical analogue 'covalent dimer' [ILE50,O- ILE50']HIV-1… · OIL A154 · binds VAL32, GLY48, GLY49, ILE50, GLY52, ILE54, THR80, ILE84 and 3 more

Residues it binds most

GLY 6, ILE 6, THR 6, PRO 5, VAL 4 (residue and the binding sites it lines).

Found with

SO4 · Sulfate ion
2NC · N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide
KVS · N~2~-[(2R,5S)-5-({(2S,3S)-2-[(N-acetyl-L-threonyl) amino]-3-methylpent-4-enoyl}amino)-2-butyl-4,4-dihydroxynonanoyl]-L-glutaminyl-L-argininamide

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