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Ligand · NXD

NXD · methyl 5-acetamido-9-{[amino(oxo)acetyl]amino}-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid

NXD, methyl 5-acetamido-9-{[amino(oxo)acetyl]amino}-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid (C14 H23 N3 O10, 393.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding…

Component
NXD
Formula
C14 H23 N3 O10
Class
sugar
Structures
2
PDB entries
1

Binding sites

NXD in 2 structures; the first of them:

  • 2G5R · Crystal structure of Siglec-7 in complex with methyl-9-(aminooxalyl-amino)-9-deoxyNeu5Ac… · NXD A145 · binds TYR26, ARG124, LYS131, TRP132, ASN133, TYR134, LYS135, TYR136
  • 2G5R · Crystal structure of siglec-7 in complex with methyl-9-(aminooxalyl- amino)-9-DEOXYNEU5AC… · NXD A145 · binds TYR26, ARG124, LYS131, TRP132, ASN133, TYR134, LYS135, TYR136

Residues it binds most

TYR 2, LYS 2, ARG 2, ASN 2, TRP 2 (residue and the binding sites it lines).

Found with

  • CYS · Cysteine
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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