Ligand · NWD

NWD · 3-(5-nitro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alanine

NWD, 3-(5-nitro-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-L-alanine (C7 H8 N4 O6, 244.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component: NWD
Formula: C7 H8 N4 O6
Class: ligand
Structures: 6
PDB entries: 3

Binding sites

NWD in 6 structures; the first of them:

3RTW · Nitrowillardiine bound to the ligand binding domain of GluA2 · NWD B601 · binds GLU13, TYR61, PRO89, LEU90, THR91, ARG96, LEU138, GLY141 and 8 more
4Q30 · Nitrowillardiine bound to the ligand binding domain of GluA2 at pH 3.5 · NWD B601 · binds GLU13, TYR61, PRO89, LEU90, THR91, ARG96, LEU138, SER140 and 9 more
4U4F · Structure of GluA2* in complex with partial agonist (S)-5-Nitrowillardiine · NWD A903 · binds GLU402, TYR450, PRO478, LEU479, THR480, ARG485, LEU650, GLY653 and 8 more
3RTW · Nitrowillardiine bound to the ligand binding domain of GLUA2 · NWD B601 · binds GLU13, TYR61, PRO89, LEU90, THR91, ARG96, LEU138, GLY141 and 8 more
4Q30 · Nitrowillardiine bound to the ligand binding domain of GLUA2 at pH 3.5 · NWD B601 · binds GLU13, TYR61, PRO89, LEU90, THR91, ARG96, LEU138, SER140 and 9 more
4U4F · Structure of GLUA2* in complex with partial agonist (S)-5- nitrowillardiine · NWD A903 · binds GLU402, TYR450, PRO478, LEU479, THR480, ARG485, LEU650, GLY653 and 8 more

Residues it binds most

LEU 20, THR 20, TYR 20, GLU 20, SER 20, ARG 20, GLY 20, MET 20, PRO 20 (residue and the binding sites it lines).

Found with

ZN · Zinc ion
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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