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Ligand · NND

NND · (2R,3R,4R,5S)-2-(hydroxymethyl)-1-nonylpiperidine-3,4,5-triol

NND, (2R,3R,4R,5S)-2-(hydroxymethyl)-1-nonylpiperidine-3,4,5-triol (C15 H31 N O4, 289.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it…

Component
NND
Formula
C15 H31 N O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

NND in 2 structures; the first of them:

  • 2V3E · acid-beta-glucosidase with N-nonyl-deoxynojirimycin · NND A1502 · binds ASP127, PHE128, TRP179, ASN234, GLU235, LEU241, PHE246, GLN284 and 13 more
  • 2V3E · Acid-beta-glucosidase with N-nonyl-deoxynojirimycin · NND A1502 · binds ASP127, PHE128, TRP179, ASN234, GLU235, LEU241, PHE246, GLN284 and 13 more

Residues it binds most

LEU 4, PHE 4, TRP 4, ASN 4, GLU 4, ASP 4, CYS 4, GLN 4, HIS 4, LYS 4 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • FUC · alpha-L-fucopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PO4 · Phosphate ion

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