Ligand · NEG

NEG · Negamycin

NEG, Negamycin (C9 H20 N4 O4, 248.3 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component: NEG
Formula: C9 H20 N4 O4
Class: ligand
Structures: 4
PDB entries: 3

Binding sites

NEG in 4 structures; the first of them:

2QEX · Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit · NEG 08823 · binds U22, G24, U510, A511, C515, A516, U517, G518 and 2 more
4W2I · Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin… · NEG AA3216 · binds A964, A965, G966, G1053, C1054, G1197, G1198, U1199 and 1 more
4WF1 · Crystal structure of the E. coli ribosome bound to negamycin. · NEG CA1657 · binds U965, G966, G1053, C1054, A1196, A1197, G1198
2QEX · Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit · NEG 08823 · binds U22, G24, U510, A511, C515, A516, U517, G518 and 2 more

Residues it binds most

G 20, C 21, U 18, A 14, PRO 2 (residue and the binding sites it lines).

Found with

MG · Magnesium ion
K · Potassium ion
CD · Cadmium ion
NA · Sodium ion
ZN · Zinc ion
CL · Chloride ion
SF4 · Iron/sulfur cluster

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